discern-reconstruction
stable
Contents:
DISCERN
API
discern-reconstruction
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Index
A
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B
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C
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D
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E
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F
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G
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H
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K
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L
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M
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N
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O
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P
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R
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S
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T
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U
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V
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W
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Z
A
axis (discern.estimators.losses.Lnorm attribute)
B
batch_size (discern.io.DISCERNData property)
build() (discern.estimators.customlayers.GaussianReparametrization method)
(discern.estimators.customlayers.MMDPP method)
(discern.estimators.customlayers.SigmaRegularization method)
build_model() (discern.DISCERN method)
(discern.estimators.batch_integration.DISCERN method)
C
call() (discern.estimators.customlayers.GaussianReparametrization static method)
(discern.estimators.customlayers.MMDPP method)
(discern.estimators.customlayers.SigmaRegularization method)
(discern.estimators.losses.DummyLoss static method)
(discern.estimators.losses.HuberLoss method)
(discern.estimators.losses.Lnorm method)
(discern.estimators.losses.MaskedCrossEntropy method)
celltypes() (discern.online_learning.OnlineWAERecipe method)
(discern.preprocessing.WAERecipe method)
(discern.WAERecipe method)
check() (discern.estimators.run_exp.CheckMetaData method)
CheckMetaData (class in discern.estimators.run_exp)
compile() (discern.DISCERN method)
(discern.estimators.batch_integration.DISCERN method)
condlayernorm() (in module discern.estimators.customlayers)
config (discern.io.DISCERNData property)
(discern.online_learning.OnlineWAERecipe property)
(discern.preprocessing.WAERecipe attribute)
(discern.preprocessing.WAERecipe property)
(discern.WAERecipe attribute)
(discern.WAERecipe property)
create_callbacks() (in module discern.estimators.callbacks)
create_decoder() (in module discern.estimators.utilities_wae)
create_encoder() (in module discern.estimators.utilities_wae)
create_model() (in module discern.estimators.utilities_wae)
D
decoder (discern.DISCERN property)
(discern.estimators.batch_integration.DISCERN property)
DelayedEarlyStopping (class in discern.estimators.callbacks)
discern
module
DISCERN (class in discern)
(class in discern.estimators.batch_integration)
discern.estimators
module
discern.estimators.batch_integration
module
discern.estimators.callbacks
module
discern.estimators.customlayers
module
discern.estimators.losses
module
discern.estimators.run_exp
module
discern.estimators.utilities_wae
module
discern.functions
module
discern.io
module
discern.mmd
module
discern.online_learning
module
discern.preprocessing
module
DISCERNData (class in discern.io)
DISCERNRunner (class in discern.estimators)
(class in discern.estimators.run_exp)
DummyLoss (class in discern.estimators.losses)
dump() (discern.online_learning.OnlineWAERecipe method)
(discern.preprocessing.WAERecipe method)
(discern.WAERecipe method)
dump_tf_records() (discern.online_learning.OnlineWAERecipe method)
(discern.preprocessing.WAERecipe method)
(discern.WAERecipe method)
E
encoder (discern.DISCERN property)
(discern.estimators.batch_integration.DISCERN property)
epsilon (discern.estimators.losses.Lnorm attribute)
estimate_csr_nbytes() (in module discern.io)
F
filtering() (discern.online_learning.OnlineWAERecipe method)
(discern.preprocessing.WAERecipe method)
(discern.WAERecipe method)
fix_batch_labels() (discern.online_learning.OnlineWAERecipe method)
from_config() (discern.estimators.losses.DummyLoss class method)
(discern.estimators.losses.HuberLoss class method)
(discern.estimators.losses.Lnorm class method)
(discern.estimators.losses.MaskedCrossEntropy class method)
from_folder() (discern.io.DISCERNData class method)
from_json() (discern.DISCERN class method)
(discern.estimators.batch_integration.DISCERN class method)
from_path() (discern.online_learning.OnlineWAERecipe class method)
(discern.preprocessing.WAERecipe class method)
(discern.WAERecipe class method)
G
GaussianReparametrization (class in discern.estimators.customlayers)
generate_cells_from_latent() (discern.DISCERN method)
(discern.estimators.batch_integration.DISCERN method)
generate_h5ad() (in module discern.io)
generate_latent_codes() (discern.DISCERN method)
(discern.estimators.batch_integration.DISCERN method)
get_config() (discern.estimators.customlayers.MMDPP method)
(discern.estimators.losses.Lnorm method)
(discern.estimators.losses.MaskedCrossEntropy method)
get_function_by_name() (in module discern.functions)
get_optimizer() (discern.DISCERN method)
(discern.estimators.batch_integration.DISCERN method)
getmembers() (in module discern.estimators.customlayers)
(in module discern.estimators.losses)
(in module discern.functions)
H
HuberLoss (class in discern.estimators.losses)
K
kernel_mmd() (discern.online_learning.OnlineWAERecipe method)
(discern.preprocessing.WAERecipe method)
(discern.WAERecipe method)
L
Lnorm (class in discern.estimators.losses)
load_model_from_directory() (in module discern.estimators.utilities_wae)
M
make_dataset_from_anndata() (in module discern.io)
MaskedCrossEntropy (class in discern.estimators.losses)
mean_var_scaling() (discern.online_learning.OnlineWAERecipe method)
(discern.preprocessing.WAERecipe method)
(discern.WAERecipe method)
merge_data_sets() (in module discern.preprocessing)
mmd_loss() (in module discern.mmd)
MMDPP (class in discern.estimators.customlayers)
mmdpp_penalty() (in module discern.estimators.customlayers)
module
discern
discern.estimators
discern.estimators.batch_integration
discern.estimators.callbacks
discern.estimators.customlayers
discern.estimators.losses
discern.estimators.run_exp
discern.estimators.utilities_wae
discern.functions
discern.io
discern.mmd
discern.online_learning
discern.preprocessing
N
np_one_hot() (in module discern.io)
O
on_batch_begin() (discern.estimators.callbacks.DelayedEarlyStopping method)
(discern.estimators.callbacks.VisualisationCallback method)
on_batch_end() (discern.estimators.callbacks.DelayedEarlyStopping method)
(discern.estimators.callbacks.VisualisationCallback method)
on_epoch_begin() (discern.estimators.callbacks.DelayedEarlyStopping method)
(discern.estimators.callbacks.VisualisationCallback method)
on_epoch_end() (discern.estimators.callbacks.DelayedEarlyStopping method)
(discern.estimators.callbacks.VisualisationCallback method)
on_predict_batch_begin() (discern.estimators.callbacks.DelayedEarlyStopping method)
(discern.estimators.callbacks.VisualisationCallback method)
on_predict_batch_end() (discern.estimators.callbacks.DelayedEarlyStopping method)
(discern.estimators.callbacks.VisualisationCallback method)
on_predict_begin() (discern.estimators.callbacks.DelayedEarlyStopping method)
(discern.estimators.callbacks.VisualisationCallback method)
on_predict_end() (discern.estimators.callbacks.DelayedEarlyStopping method)
(discern.estimators.callbacks.VisualisationCallback method)
on_test_batch_begin() (discern.estimators.callbacks.DelayedEarlyStopping method)
(discern.estimators.callbacks.VisualisationCallback method)
on_test_batch_end() (discern.estimators.callbacks.DelayedEarlyStopping method)
(discern.estimators.callbacks.VisualisationCallback method)
on_test_begin() (discern.estimators.callbacks.DelayedEarlyStopping method)
(discern.estimators.callbacks.VisualisationCallback method)
on_test_end() (discern.estimators.callbacks.DelayedEarlyStopping method)
(discern.estimators.callbacks.VisualisationCallback method)
on_train_batch_begin() (discern.estimators.callbacks.DelayedEarlyStopping method)
(discern.estimators.callbacks.VisualisationCallback method)
on_train_batch_end() (discern.estimators.callbacks.DelayedEarlyStopping method)
(discern.estimators.callbacks.VisualisationCallback method)
on_train_begin() (discern.estimators.callbacks.DelayedEarlyStopping method)
(discern.estimators.callbacks.VisualisationCallback method)
on_train_end() (discern.estimators.callbacks.DelayedEarlyStopping method)
(discern.estimators.callbacks.VisualisationCallback method)
online_training() (in module discern.online_learning)
OnlineDISCERNRunner (class in discern.online_learning)
OnlineWAERecipe (class in discern.online_learning)
out_dir (discern.io.TFRecordsWriter attribute)
P
params (discern.preprocessing.WAERecipe attribute)
(discern.WAERecipe attribute)
parse_mean_var() (in module discern.functions)
parse_tfrecords() (in module discern.io)
pnorm (discern.estimators.losses.Lnorm attribute)
prepare_train_valid() (in module discern.functions)
project_to_metadata() (discern.DISCERN method)
(discern.estimators.batch_integration.DISCERN method)
projection_pca() (discern.online_learning.OnlineWAERecipe method)
(discern.preprocessing.WAERecipe method)
(discern.WAERecipe method)
R
read_h5ad() (discern.io.DISCERNData class method)
read_process_serialize() (in module discern.preprocessing)
read_raw_input() (in module discern.preprocessing)
reconstruct() (discern.DISCERN method)
(discern.estimators.batch_integration.DISCERN method)
reconstruction_loss() (in module discern.estimators.losses)
rescale_by_params() (in module discern.functions)
restore_model() (discern.DISCERN method)
(discern.estimators.batch_integration.DISCERN method)
run_exp_multiprocess() (in module discern.estimators.run_exp)
run_projection() (in module discern.estimators.run_exp)
run_train() (in module discern.estimators.run_exp)
S
sample_counts() (in module discern.functions)
save_data() (in module discern.online_learning)
sc_raw (discern.preprocessing.WAERecipe attribute)
(discern.WAERecipe attribute)
scale (discern.estimators.customlayers.MMDPP attribute)
scale() (in module discern.functions)
scale_by_params() (in module discern.functions)
scaling() (discern.online_learning.OnlineWAERecipe method)
(discern.preprocessing.WAERecipe method)
(discern.WAERecipe method)
set_gpu_and_threads() (in module discern.functions)
setup_exp() (in module discern.estimators.run_exp)
SigmaRegularization (class in discern.estimators.customlayers)
split() (discern.online_learning.OnlineWAERecipe method)
(discern.preprocessing.WAERecipe method)
(discern.WAERecipe method)
start_step (discern.DISCERN attribute)
(discern.estimators.batch_integration.DISCERN attribute)
T
tfdata (discern.io.DISCERNData property)
TFRecordsWriter (class in discern.io)
training() (discern.DISCERN method)
(discern.estimators.batch_integration.DISCERN method)
U
update_model() (in module discern.online_learning)
use_root (discern.estimators.losses.Lnorm attribute)
V
VisualisationCallback (class in discern.estimators.callbacks)
W
wae_model (discern.DISCERN attribute)
(discern.estimators.batch_integration.DISCERN attribute)
WAERecipe (class in discern)
(class in discern.preprocessing)
write_dataset() (discern.io.TFRecordsWriter method)
Z
zeros (discern.io.DISCERNData property)
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